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Computational Biology

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Computational Biology - CIMA

WEB DEL GRUPO

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Molecular biology has undergone a revolution due to the ability to simultaneously study the functioning and expression of thousands of genes and proteins in the patient's body. Thanks to the use of computer technology, databases and statistical analysis we can analyze with precision and speed, large amounts of data that allow us to understand the complexity of the mechanisms that cause diseases.

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The Computational Biology Program at the CIMA - University of Navarra currently has these lines of research:

• Analysis of transcriptomic data, both at bulk and at single cell resolution.
• Development of new file formats for storage and access to omics data.
• Machine learning methods for biomedical problems and their translation to the clinic

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MIEMBROS ASOCIADOS

 

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Hernáez Arrazola, Mikel

Hernáez Arrazola, Mikel
Coordinador del grupo
Web personal

Líneas de investigación:
· Machine learning methods for biomedical problems and their translation to the clinic

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Tamayo-Uria, Ibon

Tamayo-Uria, Ibon
Web personal

Líneas de investigación:
· Bioinformatics

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MIEMBROS INVITADOS

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Romero Riojas, Juan Pablo
Web personal

Líneas de investigación:
· Bioinformatics

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Ruiz de los Mozos Aliaga, Igor

Ruiz de los Mozos Aliaga, Igor
Linked In

Líneas de investigación:
· Bioinformatics

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Computational Biology - Digital Medicine

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The advent of high-throughput technologies in life sciences carried revolutionary milestones in data access, management, and analysis. It also implied the development of new methodological approaches to mine these large datasets. Medicine is currently following this path with the advent of its own big data subdiscipline, namely digital medicine, where data mining through machine learning techniques constitutes its core toolkit.

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The main lines of research are:

  • Accurate predictions in health care problems when confronted with uncertainty.

  • Develop fair AI-based algorithms to combine the classical models of human physiology with observations and real-time personalized data.

  • Translational research bridging theoretical approaches and practical applications in biomedical domains.

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MIEMBROS ADSCRITOS

 

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Rubén Armañanzas

Armañanzas, Rubén

Web personal

Líneas de investigación:
· Explainable classification and prediction algorithms
· Trustworthy machine learning
· Digital Medicine

 

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García Galindo, Alberto

García Galindo, Alberto

 

Líneas de investigación:
· Fairness in Machine Learning
· Uncertainty Quantification
· Digital Medicine

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Computational Biology - Tecnun

WEB DEL GRUPO

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The Computational Biology group has long term experience in the development of optimization algorithms and statistical analysis. Our expertise is specifically focused in machine and deep learning with applications in human health and disease through data of high molecular resolution (genomics, transcriptomics, proteomics, metalobolomics,...) and biological databases (genomics, pharmacology, metabolism,...).

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The main lines of research are:

• Metabolic reprogramming in cancer in order to identify novel therapeutic targets and response markers.
• Integration of massive gene silencing experiments and drugs in the framework of precision oncology.
• Alternative splicing in different types of cancers: modifications, causes and effects.
• Predictive models for assessing drugs induced toxicity in human organs based on their structural features.
• Data analysis of genomic DNA.
• New methodologies to identify germline pathogenic variants in patients with cancer.
• Inference of gene regulatory network from RNA  sequencing data
• HERV (human endogenous retroviruses) characterization in human tissues and cancer cells.
• Compression techniques
• Personalized and Precision Medicine

 

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MIEMBROS ASOCIADOS

 

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Apaolaza Emparanza, Íñigo

Web personal

Líneas de investigación:
· Systems Biology
· Metabolism

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Carazo Melo, Fernando
Web personal

Líneas de investigación:
· Precision Medicine
· Cancer Genomics
· Computational Biology
· Biomedical Big Data Science

Aplicaciones anidadas

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Ochoa Álvarez, Idoia
Web personal

Líneas de investigación:
· Bioinformatics
· Compression

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Planes Pedreño, Francisco
Web personal

Líneas de investigación:
· Personalized medicine
· Analysis of biomedical data

Aplicaciones anidadas

Aplicaciones anidadas

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Rubio Díaz-Cordovés, Ángel
Web personal

Líneas de investigación:
· Personalized medicine
· Analysis of biomedical data